| EST name | EST sequence |
| gi|113175549|gb|EE613101.1|EE613101 | TGTCTCACTCAACTCCCCACCATCACGGCCACCGGCGAAATGGCCTCGAAATTGTGTTTCGCCATAGCCTCGTCTCGTTT CGTCACTGCTCCGGTTCGGAGACCCTCTGCTGGTTTATCTTTATCCGGCTCGTATCGGTTGGCTGGGTCCAATGATCAGT CGATCAAGATGATCGGACGAGAGGTTGCGATTCGACGGAGATTGATTATTATTTCCCCAAAGGCCACTAGTGATCAGCCA GGTAAAGTTGAAGATGAATTTACTGCAGATTCTGTTGATAGCAACATAATGCCTTATTGCAGCTTAGAACAAAAGAAGAA AACAATTGGAGAAATGGAACAAGAATTTCTTCAAGCATTACAAGCATTTTATTTCGAAGGAAAAGCTATCACGTCGAACG AGGAATTTGATAATCTCAAAGAGGAACTAATGTGGGAAGGAAGCAGTGTTGTAATGCTAAGCTCTGATGAACAGAAGCTT CTAGAGGCTACGATGGCGTACATATCTGGTAACCCGATAATGAGTGATGTAGAGTTTGACAACCTGAAAAAGAAACTAAA GAAAGATGGAAGTGATATAGTGGCTGAGGGTCCAAGATGCAGTCTTCGTAGTCGAAAGGTTTACAGTGACCTGACTGTTG ATTACCTCAAGATGTTCCTCATAAATGTCCCAGCTGCTGTTGTTGCAGTAGGATTATTCTTCTTCTTGGATGACATTACT GGGTTTGAAATTACATACCTTTTGGAGCTTCCAGAGCCATTTAGTTTTATCT |
Most similar to sp|Q8H112|PGL1A_ARATH
>>sp|Q142P6|MSBA_BURXL Lipid A export ATP-binding/permease protein
MsbA OS=Burkholderia xenovorans (strain LB400) GN=msbA
PE=3 SV=1
Length = 597
Score = 95.5 bits (236), Expect(2) = 1e-20
Identities = 49/87 (56%), Positives = 66/87 (75%)
Frame = -2
Query: 580 KGNDTMVEERGAQWSGGRKQRVAIARACSRPLRILLLDEATSALDAESDRFVQDALDRVM 401
KG +T+V + G SGG++QR+AIARA + IL+LDEATSALD+ES+R VQ AL+ +M
Sbjct: 480 KGIETLVGDNGMMLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLM 539
Query: 400 VNRTTVIVAHRLSTIQNADLIAVVRNG 320
RTT+++AHRLSTI+ AD I V+ G
Sbjct: 540 KGRTTLVIAHRLSTIERADRILVMEAG 566
Score = 25.8 bits (55), Expect(2) = 1e-20
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 738 RQQMALFSQDQLLLNNTIRANHCFWEKMTKQPESEIISAAELQWFT 601
R Q+A+ SQD +L N+T+ N + + + AA L W T
Sbjct: 430 RSQIAMVSQDVVLFNDTVANNVAYGQTADAGKVKAALRAANL-WDT 474
>sp|Q15UY7|MSBA_PSEA6 Lipid A export ATP-binding/permease protein
MsbA OS=Pseudoalteromonas atlantica (strain T6c /
BAA-1087) GN=msbA PE=3 SV=1
Length = 585
Score = 95.5 bits (236), Expect(2) = 1e-20
Identities = 46/86 (53%), Positives = 65/86 (75%)
Frame = -2
Query: 577 GNDTMVEERGAQWSGGRKQRVAIARACSRPLRILLLDEATSALDAESDRFVQDALDRVMV 398
G +T++ E G SGG++QR+AIARA +L+LDEATSALD ES+R +QDAL+ +
Sbjct: 467 GMETLIGENGLMLSGGQRQRLAIARAVLLDAPVLILDEATSALDTESERLIQDALETLQQ 526
Query: 397 NRTTVIVAHRLSTIQNADLIAVVRNG 320
+RT+++VAHRLSTI++AD I V+ G
Sbjct: 527 DRTSIVVAHRLSTIESADQILVIERG 552
Score = 25.8 bits (55), Expect(2) = 1e-20
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3
Query: 738 RQQMALFSQDQLLLNNTIRANHCFWEKMTKQPESEIISAAE 616
R+Q AL SQ L N+TI N + + PE ++++AA+
Sbjct: 414 RRQFALVSQHVTLFNDTIANNIAYGSEGRVTPE-QVLAAAK 453
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic
OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1
Length = 324
Score = 311 bits (796), Expect = 4e-84
Identities = 160/246 (65%), Positives = 199/246 (80%), Gaps = 2/246 (0%)
Frame = +1
Query: 40 MASKLCFAIASSRFVTAPVRRPSAGLSLSGSYRLAGSNDQSIKMI-GREVAIRRRLIIIS 216
M SK+ F++ S R +A R+PS+ S S S S Q ++ G+ +++RRR+ ++
Sbjct: 1 MGSKMLFSLTSPRLFSAVSRKPSS--SFSPSPPSPSSRTQWTQLSPGKSISLRRRVFLLP 58
Query: 217 PKATSDQPGKVEDEFTADSVDSNIMPYCSLEQ-KKKTIGEMEQEFLQALQAFYFEGKAIT 393
KAT++Q G V D+VDSN++PYCS+ + +KKTIGEMEQEFLQALQ+FY++GKAI
Sbjct: 59 AKATTEQSGPVG----GDNVDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIM 114
Query: 394 SNEEFDNLKEELMWEGSSVVMLSSDEQKLLEATMAYISGNPIMSDVEFDNLKKKLKKDGS 573
SNEEFDNLKEELMWEGSSVVMLSSDEQ+ LEA+MAY+SGNPI++D E+D LK KLK DGS
Sbjct: 115 SNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGS 174
Query: 574 DIVAEGPRCSLRSRKVYSDLTVDYLKMFLINVPAAVVAVGLFFFLDDITGFEITYLLELP 753
DIV+EGPRCSLRS+KVYSDL VDY KM L+NVPA VVA+GLFFFLDDITGFEITY++ELP
Sbjct: 175 DIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELP 234
Query: 754 EPFSFI 771
EP+SFI
Sbjct: 235 EPYSFI 240